Brad Barbazuk: search on Z-Library

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1

Spaceflight-induced alternative splicing during seedling development in Arabidopsis thaliana

Beisel, Nicole S., Noble, Jerald, Barbazuk, W. Brad, Paul, Anna-Lisa, Ferl, Robert J.

Journal:

npj Microgravity

Year:

2019

File:

PDF, 963 KB

2019

2

Primers for Low-Copy Nuclear Genes in the Hawaiian Endemic Clermontia (Campanulaceae) and Cross-Amplification in Lobelioideae

Pillon, Yohan, Johansen, Jennifer, Sakishima, Tomoko, Chamala, Srikar, Barbazuk, W. Brad, Stacy, Elizabeth A.

Journal:

Applications in Plant Sciences

Year:

2013

Language:

english

File:

PDF, 364 KB

english, 2013

3

Primers for Low-Copy Nuclear Genes in Metrosideros and Cross-Amplification in Myrtaceae

Pillon, Yohan, Johansen, Jennifer, Sakishima, Tomoko, Chamala, Srikar, Barbazuk, W. Brad, Stacy, Elizabeth A.

Journal:

Applications in Plant Sciences

Year:

2014

Language:

english

File:

PDF, 70 KB

english, 2014

4

MarkerMiner 1.0: A New Application for Phylogenetic Marker Development Using Angiosperm Transcriptomes

Chamala, Srikar, García, Nicolás, Godden, Grant T., Krishnakumar, Vivek, Jordon-Thaden, Ingrid E., Smet, Riet De, Barbazuk, W. Brad, Soltis, Douglas E., Soltis, Pamela S.

Journal:

Applications in Plant Sciences

Year:

2015

Language:

english

File:

PDF, 1.72 MB

english, 2015

5

Ancient signals: comparative genomics of plant MAPK and MAPKK gene families

Louis-Philippe Hamel, Marie-Claude Nicole, Somrudee Sritubtim, Marie-Josée Morency, Margaret Ellis, Juergen Ehlting, Nathalie Beaudoin, Brad Barbazuk, Dan Klessig, Justin Lee, Greg Martin, John Mundy,

Journal:

Trends in Plant Science

Year:

2006

Language:

english

File:

PDF, 122 KB

english, 2006

6

The maize W22 genome provides a foundation for functional genomics and transposon biology

Springer, Nathan M., Anderson, Sarah N., Andorf, Carson M., Ahern, Kevin R., Bai, Fang, Barad, Omer, Barbazuk, W. Brad, Bass, Hank W., Baruch, Kobi, Ben-Zvi, Gil, Buckler, Edward S., Bukowski, Robert,

Journal:

Nature Genetics

Year:

2018

Language:

english

File:

PDF, 1.69 MB

english, 2018

7

Validation of reference transcripts in strawberry (Fragariaspp.)

Clancy, Maureen A., Rosli, Hernan G., Chamala, Srikar, Barbazuk, W. Brad, Civello, P. Marcos, Folta, Kevin M.

Journal:

Molecular Genetics and Genomics

Year:

2013

Language:

english

File:

PDF, 502 KB

english, 2013

8

Maize Inbreds Exhibit High Levels of Copy Number Variation (CNV) and Presence/Absence Variation (PAV) in Genome Content

Springer, Nathan M., Ying, Kai, Fu, Yan, Ji, Tieming, Yeh, Cheng-Ting, Jia, Yi, Wu, Wei, Richmond, Todd, Kitzman, Jacob, Rosenbaum, Heidi, Iniguez, A. Leonardo, Barbazuk, W. Brad, Jeddeloh, Jeffrey A.

Journal:

Year:

2009

Language:

english

File:

PDF, 1.50 MB

english, 2009

9

Targeted sequencing in the loblolly pine (Pinus taeda) megagenome by exome capture

Leandro Neves, John Davis, Brad Barbazuk, Matias Kirst

Journal:

BMC Proceedings

Year:

2011

Language:

english

File:

PDF, 93 KB

english, 2011

10

Cellular events during scar-free skin regeneration in the spiny mouse, Acomys

Brant, Jason O., Yoon, Jung H., Polvadore, Trey, Barbazuk, William Brad, Maden, Malcolm

Journal:

Wound Repair and Regeneration

Year:

2016

Language:

english

File:

PDF, 1.06 MB

english, 2016

11

A conserved alternative splicing event in plants reveals an ancient exonization of 5S rRNA that regulates TFIIIA

Barbazuk, W. Brad

Journal:

Year:

2010

Language:

english

File:

PDF, 1.61 MB

english, 2010

12

Evolutionarily Conserved Alternative Splicing Across Monocots

Mei, Wenbin, Boatwright, Lucas, Feng, Guanqiao, Schnable, James C., Barbazuk, W. Brad

Journal:

Year:

2017

Language:

english

File:

PDF, 9.47 MB

english, 2017

13

Optical mapping as a routine tool for bacterial genome sequence finishing

Phil Latreille, Stacie Norton, Barry S Goldman, John Henkhaus, Nancy Miller, Brad Barbazuk, Helge B Bode, Creg Darby, Zijin Du, Steve Forst, Sophie Gaudriault, Brad Goodner, Heidi Goodrich-Blair, Stev

Journal:

Year:

2007

Language:

english

File:

PDF, 522 KB

english, 2007

14

Evolution of the 3R-MYB Gene Family in Plants

Feng, Guanqiao, Burleigh, J. Gordon, Braun, Edward L., Mei, Wenbin, Barbazuk, W. Brad

Journal:

Genome Biology and Evolution

Year:

2017

Language:

english

File:

PDF, 3.48 MB

english, 2017

15

Genome-wide analyses of phenylpropanoid-related genes in Populus trichocarpa, Arabidopsis thaliana, and Oryza sativa: the Populus lignin toolbox and conservation and diversification of angiosperm gene familiesThis article is one of a selection of papers published in the Special Issue on Poplar Research in Canada.

Hamberger, Björn, Ellis, Margaret, Friedmann, Michael, de Azevedo Souza, Clarice, Barbazuk, Brad, Douglas, Carl J.

Journal:

Canadian Journal of Botany

Year:

2007

Language:

english

File:

PDF, 381 KB

english, 2007

16

Genome-Wide Analysis of a Land Plant-Specific Acyl:Coenzymea Synthetase (ACS) Gene Family in Arabidopsis, Poplar, Rice and Physcomitrella

Clarice de Azevedo Souza, Brad Barbazuk, Steven G. Ralph, Joerg Bohlmann, Bjoern Hamberger and Carl J. Douglas

Journal:

New Phytologist

Year:

2008

Language:

english

File:

PDF, 4.00 MB

english, 2008

17

Comparative transcriptomic analysis of dermal wound healing reveals de novo skeletal muscle regeneration in Acomys cahirinus

Brant, Jason O., Boatwright, J. Lucas, Davenport, Ruth, Sandoval, Aaron Gabriel W., Maden, Malcolm, Barbazuk, W. Brad, Asakura, Atsushi

Journal:

Year:

2019

Language:

english

File:

PDF, 4.16 MB

english, 2019

18

Targeted amplicon sequencing of 40 nuclear genes supports a single introduction and rapid radiation of Hawaiian Metrosideros (Myrtaceae)

Dupuis, Julian R., Pillon, Yohan, Sakishima, Tomoko, Gemmill, Chrissen E. C., Chamala, Srikar, Barbazuk, W. Brad, Geib, Scott M., Stacy, Elizabeth A.

Journal:

Plant Systematics and Evolution

Year:

2019

Language:

english

File:

PDF, 4.14 MB

english, 2019

19

Sequence and Comparative Analysis of the Maize NB Mitochondrial Genome

Sandra W. Clifton, Patrick Minx, Christiane M.-R. Fauron, Michael Gibson, James O. Allen, Hui Sun, Melissa Thompson, W. Brad Barbazuk, Suman Kanuganti, Catherine Tayloe, Louis Meyer, Richard K. Wilson

Journal:

PLANT PHYSIOLOGY

Year:

2004

Language:

english

File:

PDF, 2.96 MB

english, 2004

20

Detecting Alternatively Spliced Transcript Isoforms from Single-Molecule Long-Read Sequences without a Reference Genome

Liu, Xiaoxian, Mei, Wenbin, Soltis, Pamela S., Soltis, Douglas E., Barbazuk, W. Brad

Journal:

Molecular Ecology Resources

Year:

2017

Language:

english

File:

PDF, 569 KB

english, 2017

21

Changes in protein abundance during powdery mildew infection of leaf tissues of Cabernet Sauvignon grapevine (Vitis vinifera L.)

Ellen Marsh, Sophie Alvarez, Leslie M. Hicks, W. Brad Barbazuk, Wenping Qiu, Laszlo Kovacs, Daniel Schachtman

Journal:

Year:

2010

Language:

english

File:

PDF, 165 KB

english, 2010

22

Transcriptomic and Proteomic Analyses of Pericycle Cells of the Maize Primary Root

Diana Dembinsky, Katrin Woll, Muhammad Saleem, Yan Liu, Yan Fu, Lisa A. Borsuk, Tobias Lamkemeyer, Claudia Fladerer, Johannes Madlung, Brad Barbazuk, Alfred Nordheim, Dan Nettleton, Patrick S. Schnabl

Journal:

PLANT PHYSIOLOGY

Year:

2007

Language:

english

File:

PDF, 2.23 MB

english, 2007

23

Inside Arbuscular Mycorrhizal Roots - Molecular Probes to Understand the Symbiosis

Ruzicka, Daniel, Chamala, Srikar, Barrios-Masias, Felipe H., Martin, Francis, Smith, Sally, Jackson, Louise E., Barbazuk, W. Brad, Schachtman, Daniel P.

Journal:

The Plant Genome

Year:

2013

File:

PDF, 760 KB

2013

24

The Genetic Regulation of Alternative Splicing in Populus deltoides

Noble, Jerald D., Balmant, Kelly M., Dervinis, Christopher, de los Campos, Gustavo, Resende, MÃ¡rcio F. R., Kirst, Matias, Barbazuk, William Brad

Journal:

Frontiers in Plant Science

Year:

2020

File:

PDF, 1.36 MB

2020

25

Utility of Different Gene Enrichment Approaches toward Identifying and Sequencing the Maize Gene Space

Nathan Michael Springer, Xiequn Xu and W. Brad Barbazuk

Journal:

PLANT PHYSIOLOGY

Year:

2004

Language:

english

File:

PDF, 1.90 MB

english, 2004

26

Exploring Diversification and Genome Size Evolution in Extant Gymnosperms through Phylogenetic Synthesis

Burleigh, J. Gordon, Barbazuk, W. Brad, Davis, John M., Morse, Alison M., Soltis, Pamela S.

Journal:

Journal of Botany

Year:

2012

Language:

english

File:

PDF, 1.70 MB

english, 2012

27

A Transcript Accounting from Diverse Tissues of a Cultivated Strawberry

Folta, Kevin M., Clancy, Maureen A., Chamala, Srikar, Brunings, Asha M., Dhingra, Amit, Gomide, Leandro, Kulathinal, Rob J., Peres, Natalia, Davis, Thomas M., Barbazuk, W. Brad

Journal:

The Plant Genome

Year:

2010

File:

PDF, 2.18 MB

2010

28

Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping

RICHARD J. A. BUGGS, SRIKAR CHAMALA, WEI WU, LU GAO, GREGORY D. MAY, PATRICK S. SCHNABLE, DOUGLAS E. SOLTIS, PAMELA S. SOLTIS, W. BRAD BARBAZUK

Journal:

Molecular Ecology

Year:

2010

Language:

english

File:

PDF, 215 KB

english, 2010

29

The potential of genomics in plant systematics

Soltis, Douglas E., Gitzendanner, Matthew A., Stull, Gregory, Chester, Michael, Chanderbali, Andre, Chamala, Srikar, Jordon-Thaden, Ingrid, Soltis, Pamela S., Schnable, Patrick S., Barbazuk, W. Brad

Journal:

Year:

2013

Language:

english

File:

PDF, 1.08 MB

english, 2013

30

A genome-enabled, high-throughput, and multiplexed fingerprinting platform for strawberry (FragariaL.)

Chambers, Alan, Carle, Scott, Njuguna, Wambui, Chamala, Srikar, Bassil, Nahla, Whitaker, Vance M., Barbazuk, W. Brad, Folta, Kevin M.

Journal:

Molecular Breeding

Year:

2013

Language:

english

File:

PDF, 453 KB

english, 2013

31

Population genomics of the eastern cottonwood ( Populus deltoides )

Fahrenkrog, Annette M., Neves, Leandro G., Resende, Márcio F. R., Dervinis, Christopher, Davenport, Ruth, Barbazuk, W. Brad, Kirst, Matias

Journal:

Ecology and Evolution

Year:

2017

Language:

english

File:

PDF, 2.18 MB

english, 2017

32

Genome Sequences of Mycobacteriophages Findley, Hurricane, and TBond007

Saha, Sanghamitra, Yan, Wenbo, Washington, Jacqueline M., Davis, William B., Barbazuk, W. Brad, Medellin, Rosa, Mendez, Aissa, Ramos, Jacqueline R., Sadana, Rachna, Edmonds, Miranda, Feng, Guanqiao, I

Journal:

Genome Announcements

Year:

2017

Language:

english

File:

PDF, 151 KB

english, 2017

33

Computational analysis of alternative splicing in plant genomes

Song, Qi A., Catlin, Nathan S., Brad Barbazuk, W., Li, Song

Journal:

Year:

2018

Language:

english

File:

PDF, 1.31 MB

english, 2018

34

SNP discovery via 454 transcriptome sequencing

W. Brad Barbazuk, Scott J. Emrich, Hsin D. Chen, Li Li, Patrick S. Schnable

Journal:

The Plant Journal

Year:

2007

Language:

english

File:

PDF, 526 KB

english, 2007

35

Functional analysis of the activation domain of RF2a, a rice transcription factor

M. Isabel Ordiz, Jaemo Yang, W. Brad Barbazuk, Roger N. Beachy

Journal:

Plant Biotechnology Journal

Year:

2010

Language:

english

File:

PDF, 460 KB

english, 2010

36

A Comparative Analysis of Gene Expression Profiles during Skin Regeneration in Mus and Acomys

Brant, Jason Orr, Lopez, Maria-Cecilia, Baker, Henry V., Barbazuk, W. Brad, Maden, Malcolm, McNeil, Paul

Journal:

Year:

2015

Language:

english

File:

PDF, 1.94 MB

english, 2015

37

Jasmonate induced alternative splicing responses in Arabidopsis

Feng, Guanqiao, Yoo, MiâJeong, Davenport, Ruth, Boatwright, J. Lucas, Koh, Jin, Chen, Sixue, Barbazuk, W. Brad

Journal:

Year:

2020

File:

PDF, 5.97 MB

2020

38

Extension of Lander-Waterman theory for sequencing filtered DNA libraries

Michael C Wendl, W Brad Barbazuk

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 348 KB

english, 2005

39

Silencing of Soybean Seed Storage Proteins Results in a Rebalanced Protein Composition Preserving Seed Protein Content without Major Collateral Changes in the Metabolome and Transcriptome

Monica A. Schmidt, W. Brad Barbazuk, Michael Sandford, Greg May, Zhihong Song, Wenxu Zhou, Basil J. Nikolau and Eliot M. Herman

Journal:

PLANT PHYSIOLOGY

Year:

2011

Language:

english

File:

PDF, 2.80 MB

english, 2011

40

A conserved alternative splicing event in plants reveals an ancient exonization of 5S rRNA that regulates TFIIIA

Barbazuk, W. Brad

Journal:

Year:

2010

File:

PDF, 1.61 MB

2010

41

Rapid, Repeated, and Clustered Loss of Duplicate Genes in Allopolyploid Plant Populations of Independent Origin

Richard J.A. Buggs, Srikar Chamala, Wei Wu, Jennifer A. Tate, Patrick S. Schnable, Douglas E. Soltis, Pamela S. Soltis, W. Brad Barbazuk

Journal:

Current Biology

Year:

2012

Language:

english

File:

PDF, 199 KB

english, 2012

42

Genome-Wide Identification of Evolutionarily Conserved Alternative Splicing Events in Flowering Plants

Chamala, Srikar, Feng, Guanqiao, Chavarro, Carolina, Barbazuk, W. Brad

Journal:

Frontiers in Bioengineering and Biotechnology

Year:

2015

Language:

english

File:

PDF, 1.24 MB

english, 2015

43

Transcriptomic Shock Generates Evolutionary Novelty in a Newly Formed, Natural Allopolyploid Plant

Richard J.A. Buggs, Linjing Zhang, Nicholas Miles, Jennifer A. Tate, Lu Gao, Wu Wei, Patrick S. Schnable, W. Brad Barbazuk, Pamela S. Soltis, Douglas E. Soltis

Journal:

Current Biology

Year:

2011

Language:

english

File:

PDF, 322 KB

english, 2011

44

Novel and nodulation-regulated microRNAs in soybean roots

Senthil Subramanian, Yan Fu, Ramanjulu Sunkar, W Brad Barbazuk, Jian-Kang Zhu, Oliver Yu

Journal:

Year:

2008

Language:

english

File:

PDF, 1.27 MB

english, 2008

45

Reduced representation sequencing: A success in maize and a promise for other plant genomes

W. Brad Barbazuk, Joseph A. Bedell, Pablo D. Rabinowicz

Journal:

Year:

2005

Language:

english

File:

PDF, 195 KB

english, 2005

46

An Integrated Physical and Genetic Map of the Rice Genome

Mingsheng Chen, Gernot Presting, W. Brad Barbazuk, Jose Luis Goicoechea, Barbara Blackmon, Guangchen Fang, Hyeran Kim, David Frisch, Yeisoo Yu, Shouhong Sun, Stephanie Higingbottom, John Phimphilai, D

Journal:

Year:

2002

Language:

english

File:

PDF, 2.02 MB

english, 2002

47

Aberrant splicing in maize rough endosperm3 reveals a conserved role for U12 splicing in eukaryotic multicellular development

Gault, Christine M., Martin, Federico, Mei, Wenbin, Bai, Fang, Black, Joseph B., Barbazuk, W. Brad, Settles, A. Mark

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 2.21 MB

english, 2017

48

Deep expression analysis reveals distinct cold-response strategies in rubber tree (Hevea brasiliensis)

Campos Mantello, Camila, Boatwright, Lucas, da Silva, Carla Cristina, Scaloppi, Erivaldo Jose, de Souza Goncalves, Paulo, Barbazuk, W. Brad, Pereira de Souza, Anete

Journal:

Year:

2019

Language:

english

File:

PDF, 2.67 MB

english, 2019

49

Genome-wide analysis of a land plant-specific acyl:coenzymeA synthetase (ACS) gene family in Arabidopsis, poplar, rice and Physcomitrella

Clarice De Azevedo Souza, Brad Barbazuk, Steven G. Ralph, Joerg Bohlmann, Bjoern Hamberger, Carl J. Douglas

Journal:

New Phytologist

Year:

2008

Language:

english

File:

PDF, 632 KB

english, 2008

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